Dr. Onur Başak

Dr. Onur Başak
PI
How does the diversity of the brain emerge? Can we define molecular basis for the functional diversity of our brain? These curiosity-driven questions have led my path, which started as a molecular biologist and to the fields of developmental neuroscience and adult somatic stem cells. My group employs organoids, mouse genetics and single cell genomics to study the development and diversity of the brain.
mouse genetics, organoids, single cell genomics, neural stem cells

Tiziana Hey, MSc

Tiziana Hey, MSc
PhD student
Generating a single cell RNAseq/ChIC-seq reference atlas of the adult mouse VTA as part of the BRAINSCAPES consortium and determining how histone methylation contributes to the cellular heterogeneity and long term differences in perturbation within the reward system.
Single-cell omics, immunohistochemistry, Ventral Tegmental Area (VTA), cell/nuclei isolation from mouse brain.

Keith Garner

Keith Garner
Senior Research Technician
Assisting the group primarily with cell culture, molecular biology and genotyping. Master of modified lenti- and AAV viruses. His new hobby is the cell/nuclei sorting.

Recent papers

Basak lab

  1. Rullens PMJ, de Vries SS, Lochs SJA, Markodimitraki CM, Garner KM, Adolfs Y, Mira-Bontenbal H, Müller MM, Bugani E, Tanenbaum ME, Gribnau J, Basak O, Kind J. MeCP2 binding and genome–lamina reorganization precede long gene activation during mouse corticogenesis. bioRxiv 2025.09.01.673434; doi: https://doi.org/10.1101/2025.09.01.673434. Bioarxiv: Bioarxiv manuscript
  2. Riga D, Kooij KL, Rademakers K, Wolterink-Donselaar IG, Basak O, Meye FJ. Neuropeptide Y neurons surrounding the locus coeruleus inhibit noradrenergic system activity to reduce anxiety. Sci Adv. 2025 Jul 25;11(30):eadq0011. doi: 10.1126/sciadv.adq0011. Epub 2025 Jul 23. PMID: 40700482;PMCID: PMC12285701
  3. Saglam-Metiner P, Yildirim E, Dincer C, Basak O, Yesil-Celiktas O. Humanized brain organoids-on-chip integrated with sensors for screening neuronal activity and neurotoxicity. Mikrochim Acta. 2024 Jan 3;191(1):71. doi: 10.1007/s00604-023-06165-4. PMID: 38168828
  4. Kakava-Georgiadou N, Drkelic V, Garner KM, Luijendijk MCM, Basak O, Adan RAH. Molecular profile and response to energy deficit of leptin-receptor neurons in the lateral hypothalamus. Sci Rep. 2022 Aug 4;12(1):13374. doi: 10.1038/s41598-022-16492-w. PMID: 35927440; PMCID: PMC9352899
  5. van de Haar LL, Riga D, Boer JE, Garritsen O, Adolfs Y, Sieburgh TE, van Dijk RE, Watanabe K, van Kronenburg NCH, Broekhoven MH, Posthuma D, Meye FJ, Basak O, Pasterkamp RJ. Molecular signatures and cellular diversity during mouse habenula development. Cell Rep. 2022 Jul 5;40(1):111029. doi: 10.1016/j.celrep.2022.111029. Epub 2016 Dec 8. PMID: 35793630
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